Hopefully someone will post a better explanation than this, but here's a try:
Each compressor is on it's own circuit with it's own breaker. The amps drawn by each is higher when starting than when running. Starting both at the same time would draw more than 30 amps in total, therefore compressor #1 will start first, settle into the run mode and then compressor #2 will start if necessary (see below) and settle into the run mode.
When both are running, you will see that your amperage draw will be in the 20s. How much can vary from unit to unit and the accuracy of your power management system. It also will vary depending on the voltage being provided by your 30a service (more amps will be needed at 110v than at 120v, etc.). The total amps will also depend on what else is running at the time. If you're getting adequate cooling from compressor #1 alone, you can turn off the breaker to #2, giving you more "overhead" for other appliances. From what I see in the brochures, Winnebago moved to standard 50a service in 2003.
Here's an explanation of the starting and run cycles from the basement air's manual:
8. A TYPICAL COOLING CYCLE OF THE HEAT PUMP
Begins with a call from the wall thermostat for High or Low fan (customer choice).
Indoor fan starts on the selected speed.
Within a few seconds the thermostat will call for cooling.
Compressor 1 starts.
Outdoor fan starts 2 seconds later (Low Speed).
1 minute later the thermostat calls for second stage cool (subject to 2 degree temp. differential).
Compressor 2 starts, the outdoor fan goes off (subject to available 115 volt power supply).
Outdoor fan starts again 2 seconds later (High Speed).
Both systems operate to satisfy the thermostat.
Both compressors shut off at setpoint temperature.
When the thermostat calls for cooling again it will start by calling for stage one only.
If the heat pump is unable to keep up with the load, stage 2 will start again when the indoor temperature is 2 degrees above the setpoint.
You are correct with respect to the need to modify the basement air wiring when doing a 50a conversion. Here's a good thread on the 50a conversion:
http://www.winnieowners.com/forums/f...mp-354924.html
You didn't mention if you have a generator or not. If you do, when running on the generator, your power management system isn't going to measure the total amps, just those relating to compressor #1 (and any other appliances), which can be confusing. This is because, when on generator power, compressor #2 is fed directly from a 20a breaker on the generator, bypassing the main panel's breaker and the power management sensor. The 30a generator breaker does feed the main panel. Your transfer switch manages this change in circuitry when you switch to generator power. The following thread addresses this and a number of issues relating to your questions:
http://www.winnieowners.com/forums/f...ps-135616.html
Also, here's a link to the basement air service manual, which can be very helpful:
http://bryantrv.com/docs2/docs/rvp/6535heatpump.pdf
I'm no expert so, if I've incorrectly described anything, hopefully someone will correct me.
Finally, be happy that both compressors are kicking in and you're getting 50 degree air. I'm having difficulty with compressor #2 not kicking in.